[Biopython-dev] [Bug 2475] BioSQL.Loader should reuse existing taxon entries in lineage

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2475





------- Comment #9 from ericgibert at yahoo.fr  2008-04-02 05:31 EST -------
Well, I always use DOM as I find it easier whereas SAX seems cumbersome.
I can try to convert if you want...

Another question: do you want me to add an extra function in the class to
update the tables taxon/taxon_name or you prefer it to be done in the
loader.py?

Let me know and I'll provide that missing code. I am already thinking about it
with the default to be taxon_id == ncbi_taxon_id, and if not then taxon_id will
be autogenerated.


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