[Biopython-dev] [Bug 1944] Align.Generic adding iterator and more

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1944





------- Comment #10 from biopython-bugzilla at maubp.freeserve.co.uk  2007-09-25 16:56 EST -------
I've checked in the __iter__ part of the patch, which addresses the main thrust
of this bug.

I have not yet checked in the __getitem__ bit because I think the behaviour of
the splicing options should match whatever we decide to do for SeqRecord and
Seq objects.

I'm currently considering creating a new Alignment class to live in
Bio/Align/__init__.py (which will make it easier to import - much more
discoverable) which would subclass list directly.  In particular I want to
allow creation of an alignment directly from a list/iterator/generator of
SeqRecord objects - something impossible with the current __init__ arguments.


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