[Biopython-dev] [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0

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http://bugzilla.open-bio.org/show_bug.cgi?id=2361





------- Comment #27 from biopython-bugzilla at maubp.freeserve.co.uk  2007-09-17 10:40 EST -------
Created an attachment (id=759)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=759&action=view)
Patch to remove Bio.FormatIO

This patch affects the following files:

Bio/FormatIO.py
Now just a place holder that raises an ImportError, to help anyone work out
what is wrong if they have any old code using Bio.FormatIO

Bio/SeqRecord.py
Removes the code which needed Bio.FormatIO, means Bio.SeqRecord.io is no longer
defined.

Bio/Search.py
Removes the code which needed Bio.FormatIO, means  Bio.Search.io is no longer
defined.  Bio/Search.py is still used from Bio/builders/Search/search.py and
that appears to be OK still (?)

Tests/test_format_registry.py
Removed bits using Bio.SeqRecord.io and Bio.Search.io

I think this means test_format_registry.py now passes with mxTextTools 3.0


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