[Biopython-dev] [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Sep 14 09:51:28 EDT 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2361





------- Comment #24 from mdehoon at ims.u-tokyo.ac.jp  2007-09-14 09:51 EST -------
Would it be possible to remove the dependence of Bio.SeqIO on Bio.GenBank?
I am trying to disentangle the mxTextTools-dependent stuff from the code
unaffected by the recent mxTextTools update. Often, the easiest way to do this
is to replace the Martel-dependent code with Bio.SeqIO (for example, see my
update of Bio/SeqUtils/__init__.py. But if Bio.SeqIO then relies on a
Martel-based parser, we're back to square one.


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