[Biopython-dev] [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0

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http://bugzilla.open-bio.org/show_bug.cgi?id=2361





------- Comment #15 from biopython-bugzilla at maubp.freeserve.co.uk  2007-09-12 09:19 EST -------
Good work Michiel :)

I can confirm using Windows XP, Python 2.3, and mxTextTools 3.0 the following
all pass:

test_align
test_CodonUsage
test_Fasta2
test_geo
test_KEGG
test_NNGene
test_SCOP_Astral

Note you may need to delete the Mindy index directory
Tests\SCOP\scopseq-test\astral-scopdom-seqres-all-test.fa.idx to force its
recreation in test_SCOP_Astral.py

The following still fail with mxTextTools 3.0, but do work with mxTextTools
2.0:

test_format_registry - ReaderError: invalid format starting with ''
test_GenBankFormat - AssertionError, "cannot parse"
test_Fasta - fails indexing files

I'll double check this on Linux in a few hours time.  I don't see why
test_Fasta is failing, doing "python test_Fasta.py" looks fine.


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