[Biopython-dev] [Bug 2361] Test Suite Failures from Martel/Sax with egenix mxTextTools 3.0

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2361





------- Comment #34 from biopython-bugzilla at maubp.freeserve.co.uk  2007-10-08 07:30 EST -------
Recap, most of the issues were resolved by switching Bio.Fasta from Martel to
pure python.  Additionally:

test_Fasta - 'fixed' by deprecating the Mindy indexing functions
test_KEGG - fixed by switching from Martel to pure python
test_format_registry - 'fixed' by removing FormatIO
test_geo - fixed by switching from Martel to pure python

test_GenBankFormat - this entire test is for the little-used Martel GenBank
expression, and this works with mxTextTools 2.0 but fails with mxTextTools 3.0


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