[Biopython-dev] [Bug 2380] New: Bio.Nexus is adding "?" and "-" to Bio.Data.IUPACData.ambiguous_dna_values

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2380

           Summary: Bio.Nexus is adding "?" and "-" to
                    Bio.Data.IUPACData.ambiguous_dna_values
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: minor
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: biopython-bugzilla at maubp.freeserve.co.uk


This issue was raised in Bug 2366 where a unit test was found to be "polluting"
ambiguous_dna_values, later identified as Bio.Nexus via test_Nexus.py

Need to see if Bio.Nexus should be making a copy of this dict, or perhaps
defining a subclass of the alphabet (using the Gapped() class maybe).


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