[Biopython-dev] Numeric dependencies, PDBParser.py

[Jonathan Hilmer]

Sorry if this has been covered before, but I'm new to the list and
haven't found anything searching through the archives.

I'm trying to use BioPython with 2.5 but I see that that PDBParser
requires Numeric.  Is there any way to update this dependency besides
running tools to automatically alter code
(numpy.oldnumeric.alter_code1)?

I tried going through and changing 'Numeric import Float0' to 'numpy
import float' (in several \PDB\ files) until I found another Numeric
import of 'matrixmultiply'.  Rather than continue on this path and
possibly break things (I'm a programming novice) I'm hoping someone
has an easier solution.


Thanks,

Jonathan