[Biopython-dev] BioSQL

Peter biopython at maubp.freeserve.co.uk
Mon Nov 19 14:05:23 UTC 2007

Dear list members,

As some of you may have guessed from recent bug activity, I've got 
BioSQL up and running on my machine, using MySQL.  I've even made a 
start at updating the documentation:


Annoyingly the unit test (test_BioSQL.py) wasn't working, but I believe 
that I have fixed that now in CVS. If any of the other developers have 
BioSQL setup, could you please check out the latest code and double 
check this for me.  If you use something other than MySQL that would be 
of particular interest.

Also, comments on the MySQL commit issue in Bug 2395 welcome!


P.S. I've not yet sorted out bug 2396, I want to study how BioPerl 
and/or BioJava handle this to make sure what ever I do is compatible.

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