[Biopython-dev] [Bug 1816] Error when importing GenBank file into BioSQL database

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1816





------- Comment #7 from biopython-bugzilla at maubp.freeserve.co.uk  2007-03-14 11:22 EST -------
Marc, you wrote in comment 5:

> I've attached two diffs that fixed a bunch of "bugs". A bug was
> introduced that broke a key feature (storing of ncbi taxon ids)
> when trying to fix a bug. I fixed both the code that looked up
> the ncbi taxon ids and the sql statement that stored them. 
>
> Hint: using None is better than "0" or removing it. 

I'm guessing that you are refering to the change two years ago in
biopython/BioSQL/Loader.py (revision 1.16)

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/BioSQL/Loader.py?cvsroot=biopython

See also bug 1921 which I think is a different issue (?)


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