[Biopython-dev] Moving from Numeric to NumPy

[Bruce Southey]

Hi,
I would be interested in trying to help out on this as my time
permits. Is there any plan of action?

Bruce

On 2/3/07, Peter <biopython-dev at maubp.freeserve.co.uk> wrote:
> I've compiled a rough list of modules using Numeric with the aid of grep.
>
> As far as I can tell, we have two big lumps of code (Michiel's
> Bio.Cluster module and Thomas' Bio.PDB and SVDSuperimposer modules) plus
> a selection of miscellaneous bits.
>
> Thomas & Michiel - have you looked or made plans to moving your code?
>
> Also, do we have any active developers familiar with the following modules:
>
> Jeffrey Chang (no longer active?):
> NaiveBayes.py
> MaxEntropy.py
>
> Harry Zuzan (no longer active?):
> Affy/CelFile.py and Affy/celmodule.cc
>
> Unnamed authors:
> KDTree/KDTree.py (includes C++ code so tricky)
> LogisticRegression.py
> MarkovModel.py
> Statistics/lowess.py
> distance.py
> kNN.py
>
> Some of which could be converted "by hand" almost trivially (e.g.
> distance.py), but see also:
>
> http://www.scipy.org/Porting_to_NumPy
>
> Peter
>
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