[Biopython-dev] [Bug 2419] SeqUtils __init__.py missing complement function (v1.43 and v1.44)

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2419





------- Comment #1 from mdehoon at ims.u-tokyo.ac.jp  2007-12-12 19:42 EST -------
The "complement" and similar functions were removed from Bio.SeqUtils in
Biopython 1.43 because similar functionality existed in several places in
Biopython. Apparently, we missed this call to complement in the
six_frame_translations function. I would like to avoid adding this function
back to SeqUtils. Instead, we can use the reverse_complement function in
Bio.Seq, and take its reverse.

Could you double-check if the revised version of Bio.SeqUtils.__init__.py works
for you? You can pick it up from here:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/*checkout*/biopython/Bio/SeqUtils/__init__.py?rev=1.14&cvsroot=biopython&content-type=text/plain


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