[Biopython-dev] [Bug 2390] Error importing Swiss Prot in BioSQL

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2390


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|RESOLVED                    |REOPENED
         Resolution|FIXED                       |




------- Comment #20 from biopython-bugzilla at maubp.freeserve.co.uk  2007-12-12 17:01 EST -------
Hi Jonathan,

I'm glad we've fixed the error for you.  Could you be a little more precise
about what isn't working with getting Swiss Prot cross-references into BioSQL?

e.g. Pick a specific SwissProt record, and quote the lines from the file
containing the cross-references.

That should be enough for me to try and track down what's going on.

By the way - if you want to work with BioSQL, you have to use SeqRecord objects
(e.g. from the Bio.SeqIO parser), and not the Bio.SwissProt.SProt.Record
objects.  This probably explains the error you mentioned using the RecordParser
parser instead.

Peter


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