[Biopython-dev] [Bug 2353] Swissprot (UniProt) files with ** lines fail to parse

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2353





------- Comment #13 from biopython-bugzilla at maubp.freeserve.co.uk  2007-08-31 07:52 EST -------
That grep output was a nice idea.  It looks like while most cases are FR, **,
SQ there are several variations to cover.

Please try Bio/SwissProt/SProt.py revision 1.41, which should cope with the **
lines anywhere (except some positions within references).  This is the only
file changed, so you don't need to worry about updating anything else in
Biopython.

I have tried this on the entire files 27.M_thermoautotrophicum.dat and
121.T_whipplei_Twist.dat from
ftp://ftp.ebi.ac.uk/pub/databases/integr8/uniprot/proteomes/


-- 
Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.