[Biopython-dev] [Bug 2051] XML Blast parser unusable with multiple queries and recent (2.2.13) blast - patch attached

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2051


mdehoon at ims.u-tokyo.ac.jp changed:

           What    |Removed                     |Added
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                 CC|                            |mdehoon at ims.u-tokyo.ac.jp




------- Comment #4 from mdehoon at ims.u-tokyo.ac.jp  2006-10-19 00:44 -------
A new blast version (2.2.15) came out recently, so I tried the XML parser with
the its output of a multiple query. I didn't notice a problem except that all
alignments are put into one list, which is annoying because then we have to
find out which alignment corresponds to which query.
So, which specific problem with the XML parser are you trying to solve? And do
these problems still occur with blast 2.2.15? (as far as I can tell, its XML
output is the same as for blast 2.2.14, so it's probably here to stay).


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