[Biopython-dev] [Bug 1972] New Prosite comment qualifier breaks Bio.Prosite.RecordParser

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Mar 21 08:25:42 UTC 2006


------- Comment #2 from bill at barnard-engineering.com  2006-03-21 03:25 -------
I thought of this after I submitted the patch. Even though the existing test
simply compares the output to the stored output of a previous test, this bug
could be added as a test case such that if an unsupported change occurs to the
Prosite format, an exception will be raised when running the test.

Add the lines to Tests/test_prosite2.py:

expasy_dict = Prosite.ExPASyDictionary(parser=record_parser)
entry = expasy_dict['PS00079']
print entry.accession

or some such, then regenerate the test output file.

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