[Biopython-dev] [Bug 1933] Iterator support for Standalone XML blast output with multiple querys

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http://bugzilla.open-bio.org/show_bug.cgi?id=1933





------- Comment #7 from biopython-bugzilla at maubp.freeserve.co.uk  2006-02-22 06:19 -------
Created an attachment (id=293)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=293&action=view)
Python script to test the Blast XML iteration

This is a simple test script which uses the standalone RPS-BLAST output file
xbt_iter_rps.xml as the input file, attachment 290 on this bug.

Using Michael Anthony Maibaum's patch (attachment 266) this seems to work fine.

I would be happy to check in the patch and then integrate the XML iteration
into Tests/test_GenBank.py

Note:
It might be even better to create a matched set of normal BLAST files (plain
text and XML) with a test script to confirm they behave identically in
BioPython.




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