[Biopython-dev] uniprot release 49/biopython script no longer work

Michiel De Hoon mdehoon at c2b2.columbia.edu
Fri Feb 10 16:39:53 EST 2006

Could you post the error message that you're getting? Preferably, with a
simple script that causes the error to appear?


Michiel de Hoon
Center for Computational Biology and Bioinformatics
Columbia University
1150 St Nicholas Avenue
New York, NY 10032

-----Original Message-----
From: biopython-dev-bounces at portal.open-bio.org on behalf of gould at embl.de
Sent: Thu 2/9/2006 4:37 AM
To: biopython-dev at biopython.org
Subject: [Biopython-dev] uniprot release 49/biopython script no longer work

I've been having problems with some of our applications here that use
scripts to retrieve a record from uniprot/swissprot given an accession
nr/ID....As far as I'm aware the problem only occurred after the release 49.0
of uniprot/swissprot db yesterday...I see from the release notes that some
changes were made to the annotation format and suspect this is why the
biopython scripts are no longer happy??....I've checked to make sure I have
latest version of biopython but this has not remedied the problem.....This
problem would seem to lie with biopython but I was wondering if you
are aware of this problem and if any fix is to be made available??


Kate Gould

Software Engineer

Gibson Team
Structural and Computational Biology Unit
Meyerhofstrasse 1
69117 Heidelberg,  Germany

phone:         +49 6221 387 451
fax:        +49 6221 387 517

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