[Biopython-dev] [Bug 2051] XML Blast parser unusable with multiple queries and recent (2.2.13) blast - patch attached

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http://bugzilla.open-bio.org/show_bug.cgi?id=2051





------- Comment #12 from jmjoseph at andrew.cmu.edu  2006-12-28 15:27 -------
Created an attachment (id=527)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=527&action=view)
Patch to NCBIXML.py

These patches to NCBIXML and Record:
 * replace query_letters with query_length,
 * use tuples for _hsp.identities, positives, and gaps
 * store _hsp.align_length
 * separate the hit id and hit def elements. title is retained


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