[Biopython-dev] [Bug 2051] XML Blast parser unusable with multiple queries and recent (2.2.13) blast - patch attached

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Dec 28 20:27:22 UTC 2006


------- Comment #12 from jmjoseph at andrew.cmu.edu  2006-12-28 15:27 -------
Created an attachment (id=527)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=527&action=view)
Patch to NCBIXML.py

These patches to NCBIXML and Record:
 * replace query_letters with query_length,
 * use tuples for _hsp.identities, positives, and gaps
 * store _hsp.align_length
 * separate the hit id and hit def elements. title is retained

Configure bugmail: http://bugzilla.open-bio.org/userprefs.cgi?tab=email
------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

More information about the Biopython-dev mailing list