[Biopython-dev] [Bug 2169] New: 'close' method is missing for ReseekFile wrapper

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Dec 22 15:54:01 UTC 2006


           Summary: 'close' method is missing for ReseekFile wrapper
           Product: Biopython
           Version: 1.24
          Platform: All
        OS/Version: Mac OS
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Other
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: sunhwanj at gmail.com

ReseekFile class doesn't have close method.
While I tried to read PDB file after I download pdb file using Bio.db,
PDBParser complains that it can't close pdbfile.

>>> from Bio.PDB.PDBParser import PDBParser
>>> from Bio import db
>>> p = PDBParser()
>>> p.get_structure('1kdx', db['pdb']['1kdx'])

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
line 67, in get_structure
AttributeError: ReseekFile instance has no attribute 'close'

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