[Biopython-dev] [Bug 2158] New: NCBIXML Returns the union of all the hits it has seen

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Dec 4 19:14:31 UTC 2006


           Summary: NCBIXML Returns the union of all the hits it has seen
           Product: Biopython
           Version: Not Applicable
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Main Distribution
        AssignedTo: biopython-dev at biopython.org
        ReportedBy: kael.fischer at gmail.com

If a BlastParser has already been used, it does not reset its _blast record. 
Leading to man potential problems.  This should at least be documented, or
better yet the "self._blast = Record.Blast()" moved to parse(self), and perhaps
setting it to None in __init__(self).

Alternately, if the parser was changed to yield separate records for each XML
<iteration>, per the Blast Record documentation , this would all be rewritten
and would be moot.

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