[Biopython-dev] [Bug 1909] Format issue with GenBank with segmented BACs (eg GI:55276707)

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Nov 29 18:19:42 EST 2005


------- Comment #1 from biopython-bugzilla at maubp.freeserve.co.uk  2005-11-29 18:19 -------
You haven't said which version of BioPython you are using, I would guess
BioPython 1.40b with Python 2.4 on Windows XP.

Since the 1.40 release, the Genbank parser has been switched from using Martel
to a "simpler" python parser which should be easier to maintain.  Could you
download the latest Bio/GenBank/__init__.py file from CVS and repeat the test?


You could rename the existing
C:\Python24\lib\site-packages\Bio\GenBank\__init__.py file so something else
(so you can undo the change) and save the latest version in its place.

It would also be useful to see the full test script... 


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