[Biopython-dev] [Bug 1762] Bio.GenBank.FeatureParser dislikes valid accessions and locus lines

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Nov 17 13:27:53 EST 2005


------- Comment #5 from mdehoon at ims.u-tokyo.ac.jp  2005-11-17 13:27 -------
I downloaded U00096 from Genbank, ran it through seqret, and tried to parse the
resulting file with the patched Genbank parser. Whereas the LOCUS line doesn't
cause a problem any more, there are other (seqres-specific?) lines that cause
the parsing to fail (starting with the "BASE COUNT" line).
Can this patch be fixed? It's better to start from the file created by seqres
to make sure all nonstandard lines can be handled.

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