[Biopython-dev] [Bug 1762] Bio.GenBank.FeatureParser dislikes valid accessions and locus lines

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1762





------- Comment #5 from mdehoon at ims.u-tokyo.ac.jp  2005-11-17 13:27 -------
I downloaded U00096 from Genbank, ran it through seqret, and tried to parse the
resulting file with the patched Genbank parser. Whereas the LOCUS line doesn't
cause a problem any more, there are other (seqres-specific?) lines that cause
the parsing to fail (starting with the "BASE COUNT" line).
Can this patch be fixed? It's better to start from the file created by seqres
to make sure all nonstandard lines can be handled.




------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.