[Biopython-dev] Re: Who's the dude?

[Iddo Friedberg]

Michal,

test_Compass is failing its regression test. Can you have a look?

Thanks,

Iddo


[idoerg at hotdog:biopython/Tests]> python test_Compass.py
testAlignmentParsingOne (__main__.CompassTest) ... FAIL
testAlignmentParsingTwo (__main__.CompassTest) ... ok
testCompassIteratorEasy (__main__.CompassTest) ... ok
testCompassIteratorHard (__main__.CompassTest) ... ok
testCompassParser (__main__.CompassTest) ... ok
testCompassScanAndConsume (__main__.CompassTest) ... ok

======================================================================
FAIL: testAlignmentParsingOne (__main__.CompassTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_Compass.py", line 100, in testAlignmentParsingOne
    self.assertEquals("++ ++++++", com_record.positives)
  File "/usr/lib/python2.3/unittest.py", line 302, in failUnlessEqual
    raise self.failureException, \
AssertionError: '++ ++++++' != '++ ++++++\n'

----------------------------------------------------------------------
Ran 6 tests in 0.009s

FAILED (failures=1)


--

Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037, USA
Tel: +1 (858) 646 3100 x3516
Fax: +1 (858) 646 3171
http://ffas.ljcrf.edu/~iddo
-------------------------------------
Automated Protein Function Prediction Meeting, June 24, 2005
http://ffas.burnham.org/AFP

On Fri, 11 Feb 2005, Iddo Friedberg wrote:

> Michal,
> 
> Thanks.
> 
> Just send me oyur patch, or the fixed module. I'll commit it.
> 
> Best,
> 
> Iddo
> 
> 
> --
> Iddo Friedberg, Ph.D.
> The Burnham Institute
> 10901 N. Torrey Pines Rd.
> La Jolla, CA 92037, USA
> Tel: +1 (858) 646 3100 x3516
> Fax: +1 (858) 646 3171
> http://ffas.ljcrf.edu/~iddo
> -------------------------------------
> Automated Protein Function Prediction Meeting, June 24, 2005
> http://ffas.burnham.org/AFP
> 
> On Fri, 11 Feb 2005, Michal Kurowski wrote:
> 
> > Iddo Friedberg <idoerg at burnham.org> wrote:
> > >
> > > Do you know Michal Kurowski? He posted something on the biopython list a
> > > couple of days ago, but when I tried to reply, his address
> > > mkur at gazeta.pl gave a "unknown user". Thought you'll be able to help.
> > 
> > Hi Iddo - sorry for that.
> > 
> > The "gazeta.pl" is my anti-spamers address I use on public mailing
> > lists. I use "genesilico.pl" for all real stuff. 
> >  
> > I'm puzzled your original reply was unsuccessful though. Probably
> > because of differences between headers and the envelope.
> > 
> > What about the Bio.Compass module (and his maintenance) ? 
> > 
> > Cheers,
> >  
> > -- 
> > Michal Kurowski
> > <michal at genesilico.pl>
> > 
> 
>