[Biopython-dev] [Bug 1920] Bio.Geo does not support recent GEO files

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1920





------- Comment #2 from biopython-bugzilla at maubp.freeserve.co.uk  2005-12-18 15:50 -------
Created an attachment (id=261)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=261&action=view)
ZIP file containing revised test_geo.py and five test files

The example files are from the NCBI webpage, they are examples of valid GEO
SOFTtext submission files, but its the closest they offered.

* a single Platform submission.
* three dual channel Sample submissions.
* a single Series submission.
* a family (Platform, Samples and Series) submission.
* three Affymetrix Sample submissions. 

http://www.ncbi.nlm.nih.gov/projects/geo/info/soft2.html#SOFTsubmissionexamples




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