[Biopython-dev] [Bug 1627] "Unexpected end of stream" when parsing Blast results

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.bioperl.org/show_bug.cgi?id=1627

chapmanb at arches.uga.edu changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED



------- Additional Comments From chapmanb at arches.uga.edu  2004-05-05 12:49 -------
Thanks for the report -- I believe this is the same problem that has been
reported on the mailist list:

http://portal.open-bio.org/pipermail/biopython/2004-April/002008.html

http://portal.open-bio.org/pipermail/biopython/2004-March/001903.html

To fix, please add format_type = "HTML" to your NCBIWWW.blast call. This is
fixed in CVS and will be in the next release so it won't be necessary.

I'll mark this as fixed for now -- if it still doesn't work please report back.
Thanks again.



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