[Biopython-dev] [Bug 1689] Seq is broken in CVS

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1689





------- Additional Comments From f.sohm at whsmithnet.co.uk  2004-08-25 12:22 -------
Created an attachment (id=168)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=168&action=view)
Seq.py with some fix in complement and reverse_complement()

Added a method __maketrans in Seq

in Seq.complement() and Seq.reverse_complement() replaced seq.alphabet by
self.alphabet.

Added support for lower case DNA in Seq.complement() and
Seq.reverse_complement. Same thing in MutableSeq.complement()

I wonder if returning a Seq from a complement is a good idea as well
if your original sequence is a DNA(going 5'->3') the complement will not be a
DNA (it goes 3'->5').

Bye

Fred

Fred




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