[Biopython-dev] aaindex1

Brad Chapman chapmanb at uga.edu
Tue Apr 6 19:07:45 EDT 2004

Hi Iddo;

> AAIndex1 is a database (flat file) of 494 numeric values assigned to
> amino acids. AAIndex2 are substitution matrices. I can create an AAIndex
> directory, under which I will place the AAIndex1.py file. AAIndex2 will
> have to wait.

That sounds great -- no worries about the AAIndex2 -- it'll happen
when it happens. In the meantime, as long as it's documented
(Biopython DCA, watch out) what AAIndex1 does and what files it
deal with that sounds great.

> Just commited to CVS new versions of Bio.utils and Alphabet.Reduced it...

Sweet. Threats always work best -- I never imagined marrying into
the mob would do so much to advance my career.


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