[Biopython-dev] Oligopython page

Michiel Jan Laurens de Hoon mdehoon at ims.u-tokyo.ac.jp
Tue Apr 6 01:10:08 EDT 2004


Thanks for writing oligopython! I had a look at your package to see if I could 
write a setup.py for it, and I noticed that the file parser makes use of C++ 
rather than C. If I'm not mistaken, the only C++ code currently in Biopython is 
Bio.KDTree, which is not installed by default because of problems building it on 
some platforms. Is there some Biopython policy on C++ code? It may also be 
possible to use Martel for the file parsing. I am not familiar with Martel 
myself, so I cannot give much guidance there, but maybe somebody can.


Harry Zuzan wrote:

> Hi,
> I can't get dyndns to update www.oligopython.org.
> For the time being, anyone interested can get the same pages from
> oligopython.dyndns.org.
> Sorry about any confusion.
> Also, there is not a lot of code at this point so I just attached it.
> Harry
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Michiel de Hoon, Assistant Professor
University of Tokyo, Institute of Medical Science
Human Genome Center
4-6-1 Shirokane-dai, Minato-ku
Tokyo 108-8639

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