[Biopython-dev] Something wrong with Martel?

[Jeffrey Chang]

Thanks for that patch!  I've committed it, and the LAX test suite runs 
properly now.

Jeff



On Friday, July 25, 2003, at 01:29  AM, Andreas Kuntzagk wrote:

> Hi,
>
>> Andreas, this looks like it might be related to the switch over to
>> using a dict object?  Could you take a look at it?
>
> First issue is related to dict. Appended a diff to patch this.
>
> Would be good if setup.py in BioPython root dir would also test the
> Martel tests.
>
>>> Second, trying to run the same script as Andrew wrote in the Readme
>>> (attached), I only get:
>>> <?xml version="1.0" encoding="iso-8859-1"?>
>>>
>>> Basically nothing is executed after the command:
>>> parser.parse(open(File))
>>>
>>> Is something wrong on my system or something wrong with the Martel
>>> code?
>>> Could anyone try to run the above script?
> Yair, do you have a file "/etc/passwd" (looks like your email is from a
> Windows system)? What do you mean "nothing is executed"? Script hangs,
> script returns whithout output, script throws an error?
>
> The parser.parse works for me, but the script is failing at
> doc.normalize() whith
>
> AttributeError: 'NoneType' object has no attribute 'normalize'
>
> I still don't know enough about the Martel infrastructure to understand
> this. sax2dom.document seems to be None.
>
> By, Andreas
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