[Biopython-dev] Something wrong with Martel?
Jeffrey Chang
jchang at jeffchang.com
Thu Jul 24 12:15:03 EDT 2003
Yep, it looks like something might be wrong with Martel now.
Andreas, this looks like it might be related to the switch over to
using a dict object? Could you take a look at it?
Jeff
On Thursday, July 24, 2003, at 07:23 AM, Yair Benita wrote:
> I am trying to use Martel to make a parser but something appears to be
> wrong.
> First, the test fails after building:
> ###### running tests in test_IterParser ###############
> ---> I skip all the line until the last:
> File "/Volumes/Applications/CVS/biopython/Martel/LAX.py", line 101,
> in
> __getattr__
> raise AttributeError(name)
> AttributeError: data
>
> I think this is something in the test file and not in the Martel code
> because all my other Martel scripts work.
>
> Second, trying to run the same script as Andrew wrote in the Readme
> (attached), I only get:
> <?xml version="1.0" encoding="iso-8859-1"?>
>
> Basically nothing is executed after the command:
> parser.parse(open(File))
>
> Is something wrong on my system or something wrong with the Martel
> code?
> Could anyone try to run the above script?
> Thanks,
> Yair
> --
> Yair Benita
> Pharmaceutical Proteomics
> Utrecht University
>
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