[Biopython-dev] [Bug 1462] New: building Bio.trie fails

Jeffrey Chang jchang at jeffchang.com
Tue Jul 1 00:04:14 EDT 2003


Hi,

Thanks for the report.  I think this has been fixed in the CVS version 
of the triemodule.c file, at cvs.biopython.org.  Please let me know if 
it is still a problem.

Thanks,
Jeff

On Monday, June 30, 2003, at 01:36  PM, 
bugzilla-daemon at portal.open-bio.org wrote:

> http://bugzilla.bioperl.org/show_bug.cgi?id=1462
>
>            Summary: building Bio.trie fails
>            Product: Biopython
>            Version: 1.10
>           Platform: PC
>         OS/Version: Linux
>             Status: NEW
>           Severity: blocker
>           Priority: P2
>          Component: Main Distribution
>         AssignedTo: biopython-dev at biopython.org
>         ReportedBy: malex at purdue.edu
>
>
> building 'Bio.trie' extension
> gcc -DNDEBUG -DNDEBUG -g -O3 -Wall -Wstrict-prototypes 
> -fno-strict-aliasing
> -fPIC -IBio -I/usr/include/python2.2 -c Bio/triemodule.c -o
> build/temp.linux-i686-2.2/triemodule.o
> In file included from Bio/triemodule.c:3:
> Bio/trie.h:12: warning: function declaration isn't a prototype
> Bio/triemodule.c:606:1: missing terminating " character
> Bio/triemodule.c:607: error: syntax error before "This"
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:607: error: stray '\' in program
> Bio/triemodule.c:616:1: missing terminating " character
> Bio/triemodule.c:595: warning: `trie_methods' defined but not used
> Bio/triemodule.c:605: warning: `trie__doc__' defined but not used
> error: command 'gcc' failed with exit status 1
>
>
>
> In order to resolve it one simply has to join the lines 606 and 607 
> because line
> 607 is not recognised as a string otherwise. When that is done the 
> build goes fine.
>
> Regards,
>
> Alex.
>
>
>
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