[Biopython-dev] Blast table parser

Jeffrey Chang jchang at SMI.Stanford.EDU
Wed Jan 29 15:04:56 EST 2003

On Wed, Jan 29, 2003 at 03:24:03AM -0800, Iddo Friedberg wrote:
[Iddo announces new code]
> It parses a BLAST output table (formatted through "blastpgp -m 9"). 
> Since this table does not contain a sequence alignments, and it does 
> contain other stuff, I don't think that the Bio/Blast/Record object is 
> suitable, so I created two new classes, BlastTableRec, which can have 0 
> or more BlastTableEntry(s) in it. Actually, I already commited it 
> (sorry...) so you can have a look. Let me know how you would like me to 
> modify it. If you think I can do this with the Bio/Blast/Record let me 
> know, I will make an effort.

Great!  Probably not necessary to make it work with Bio/Blast/Record.
Someone can do it later if they really need it.


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