[Biopython-dev] Re: [BioPython] Blast/NCBIWWW parser Problems

[Jeffrey Chang]

This turned out to be because NCBI changed their format.  The parser
is fixed and committed.

Jeff


On Fri, Sep 20, 2002 at 04:39:08PM +0900, ±è½Â¹ü wrote:
> Hi.
> 
> Maybe.. Blast format changed again.
> 
> I think, in NCBIWWW/_scan_one_pairwise_alignment method 
> "read_and_call_until(uhandle, consumer.noevent, contain='<PRE>')" is needed before read_and_call(....<PRE>).
> 
> and in NCBIWWW/_scan_alignment_header method
> alignment header can be three lines.
> so Parser can not find "Length =" string.
> 
> check it please.
> 
> I used Python 2.2 and biopython-1.00a4, of course with a updated NCBIWWW.py in CVS
> 
> 
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