[Biopython-dev] Notification: incoming/89

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new message incoming/89

Message summary for PR#89
	From: andreas.kuntzagk at mdc-berlin.de
	Subject: Error in Indexing w/ Mindy
	Date: Wed, 16 Oct 2002 05:35:23 -0400
	0 replies 	0 followups

====> ORIGINAL MESSAGE FOLLOWS <====

>From andreas.kuntzagk at mdc-berlin.de Wed Oct 16 05:35:24 2002
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Date: Wed, 16 Oct 2002 05:35:23 -0400
Message-Id: <200210160935.g9G9ZN4P031757 at pw600a.bioperl.org>
From: andreas.kuntzagk at mdc-berlin.de
To: biopython-bugs at bioperl.org
Subject: Error in Indexing w/ Mindy

Full_Name: Andreas Kuntzagk
Module: Mindy.FlatDB
Version: 
OS: Linux
Submission from: tahiti.bioinf.mdc-berlin.de (141.80.80.11)


When I try the Scripts/Index/indexing_ex.py I get following error:

Traceback (most recent call last):
  File "indexing_ex.py", line 45, in ?
    sys.exit(main(index_type, args, db_name))
  File "indexing_ex.py", line 26, in main
    create_index(files, db_name)
  File "/home/kuntzagk/lib/python2.2/site-packages/Bio/Mindy/SimpleSeqRecord.py",
line 111, in create_flatdb
    creator = FlatDB.create(db_name, unique_name, alias_names)
  File "/home/kuntzagk/lib/python2.2/site-packages/Bio/Mindy/FlatDB.py", line
297, in create
    return open(dbname, "rw")
  File "/home/kuntzagk/lib/python2.2/site-packages/Bio/Mindy/FlatDB.py", line
304, in open
    return MemoryFlatDB(dbname)
  File "/home/kuntzagk/lib/python2.2/site-packages/Bio/Mindy/FlatDB.py", line
130, in __init__
    BaseFlatDB.__init__(self, dbname, INDEX_TYPE)
TypeError: __init__() takes exactly 2 arguments (3 given)

Seems the error is in Mindy.MemoryFlatDB.__init__