[Biopython-dev] BioSQL upgrade [0 of 3]

Yves Bastide Yves.Bastide at irisa.fr
Fri Nov 22 17:40:15 EST 2002

Here's a set of patches to update BioSQL.  It:

* uses an up-to-date biosql schema [1];

* can put about all of a Bio.SeqRecord.SeqRecord [2] in the database.

[1] biosql-schema
The schema used is what's currently in CVS (biosqldb-mysql.sql 1.18, and 
biosqldb-pg.sql created from it), with one exception: 
reference.reference_medline must be a VARCHAR(20).

[2] Bio.SeqRecord.SeqRecord
I believe this means in practice a GenBank record, as SProt uses another 


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