[Biopython-dev] Notification: incoming/75

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new message incoming/75

Message summary for PR#75
	From: daishi at egcrc.net
	Subject: Bio.Align.fastpairwise
	Date: Fri, 12 Jul 2002 13:25:40 -0400
	0 replies 	0 followups

====> ORIGINAL MESSAGE FOLLOWS <====

>From daishi at egcrc.net Fri Jul 12 13:25:40 2002
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Date: Fri, 12 Jul 2002 13:25:40 -0400
Message-Id: <200207121725.g6CHPeYC027601 at pw600a.bioperl.org>
From: daishi at egcrc.net
To: biopython-bugs at bioperl.org
Subject: Bio.Align.fastpairwise

Full_Name: daishi
Module: Bio.Align.fastpairwise
Version: CVS v1.3
OS: linux
Submission from: 63-193-205-1.egcrc.org (63.193.205.1)


>>> from Bio.Align import fastpairwise
>>> fastpairwise.align_local("abcde", "c", -0.3, -0.1)
[('abcde', '--c--', 1, 1, 3)]

The second to last field in the response should
be 2, I think.

When there are multiple matches only one match
exhibits this behavior:

>>> fastpairwise.align_local("abcce", "c", -0.3, -0.1)
[('abcce', '---c-', 1, 1, 4), ('abcce', '--c--', 1, 2, 3)]

I traced some of the code execution and found
that the cached results return the correct
response, but the original traceback is doing
something incorrect.