[Biopython-dev] Notification: incoming/45

[biopython-bugs at bioperl.org]

JitterBug notification

jchang changed notes

Message summary for PR#45
	From: gec at compbio.berkeley.edu
	Subject: PDB sequence numbers can be negative
	Date: Tue, 23 Oct 2001 18:54:38 -0400
	0 replies 	0 followups
	Notes: Gavin reports this bug as fixed with his new SCOP module.
- jchang


====> ORIGINAL MESSAGE FOLLOWS <====

>From gec at compbio.berkeley.edu Tue Oct 23 18:54:38 2001
Received: from localhost (localhost [127.0.0.1])
	by pw600a.bioperl.org (8.11.2/8.11.2) with ESMTP id f9NMscB13266
	for <biopython-bugs at pw600a.bioperl.org>; Tue, 23 Oct 2001 18:54:38 -0400
Date: Tue, 23 Oct 2001 18:54:38 -0400
Message-Id: <200110232254.f9NMscB13266 at pw600a.bioperl.org>
From: gec at compbio.berkeley.edu
To: biopython-bugs at bioperl.org
Subject: PDB sequence numbers can be negative

Full_Name: Gavin Crooks
Module: SCOP/Location.py
Version: 
OS: 
Submission from: sienna.berkeley.edu (128.32.236.51)



PDB residue sequence numbers can, on occasion, be
negative. e.g. 1B9N. SCOP domains sometimes start
on negative sequence numbers. This breaks the
location parser in Bio.SCOP.Location.py