[Biopython-dev] Bio.KEGG

Jeffrey Chang jchang at SMI.Stanford.EDU
Wed Jul 25 10:17:53 EDT 2001

Hi Tarjei,

Thanks very much.  I'm in copenhagen right now, so I"ll take a look at it
next week after I get back.


On Mon, 23 Jul 2001, Tarjei S Mikkelsen wrote:

>  Hi,
>  as I mentioned earlier this weekend I have begun writing a BioPython
> compatible parser for the KEGG database that I would be happy to contribute
> to the project. Currently only the Ligand/Enzyme section is supported,
> but the Ligand/Compound and the Genes section should follow soon.
>  Since I don't have CVS access I've attached the code here. It is organized
> to plug directly into the current BioPython distribution. The source is
> heavily inspired by the Bio.GenBank module (which makes sense since KEGG
> has (unfortunately) modeled its flatfile format on the GenBank format).
>  thanks,
>  Tarjei Mikkelsen
>  tarjei at genome.wi.mit.edu

More information about the Biopython-dev mailing list