[Biopython-dev] Failed Tests

[Gavin E. Crooks]

I now have 3 tests failing. (Which is alot better than a month ago.)
test_intelligenetics and test_metatool still fail, as does test_nbrf.

Gavin Crooks
gec at compbio.berkeley.edu
http://threeplusone.com

======================================================================
ERROR: test_intelligenetics
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Traceback (most recent call last):
  File "run_tests.py", line 136, in runTest
    __import__(self.test_name)
  File "test_intelligenetics.py", line 29, in ?
    src_handle = open( datafile )
IOError: [Errno 2] No such file or directory: 'IntelliGenetics/TAT_mase_nuc.txt'======================================================================
ERROR: test_metatool
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 136, in runTest
    __import__(self.test_name)
  File "./test_metatool.py", line 29, in ?
    src_handle = open( datafile )
IOError: [Errno 2] No such file or directory: 'MetaTool/meta9.out'
======================================================================
ERROR: test_nbrf
----------------------------------------------------------------------
Traceback (most recent call last):
  File "run_tests.py", line 136, in runTest
    __import__(self.test_name)
  File "test_nbrf.py", line 6, in ?
    import Bio.NBRF
  File "/n/teal.berkeley.edu/home/gec/local/lib/python2.1/site-packages/Bio/NBRF/__init__.py", line 24, in ?
    import nbrf_format
  File "/n/teal.berkeley.edu/home/gec/local/lib/python2.1/site-packages/Bio/NBRF/nbrf_format.py", line 40, in ?
    from Bio.NBRF.ValSeq import valid_sequence_dict
ImportError: No module named ValSeq
----------------------------------------------------------------------
Ran 32 tests in 76.650s