[Biopython-dev] Notification: incoming/32

[biopython-bugs at bioperl.org]

JitterBug notification

jchang moved PR#32 from incoming to fixed-bugs
Message summary for PR#32
	From: Jeffrey Chang <jchang at SMI.Stanford.EDU>
	Subject: Re: [Biopython-dev] Notification: incoming/31
	Date: Wed, 16 May 2001 11:58:00 -0700
	0 replies 	0 followups
	Notes: duplicate of Bug #31.  How did this get split?


====> ORIGINAL MESSAGE FOLLOWS <====

>From jchang at SMI.Stanford.EDU Wed May 16 13:53:23 2001
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Date: Wed, 16 May 2001 11:58:00 -0700
Subject: Re: [Biopython-dev] Notification: incoming/31
From: Jeffrey Chang <jchang at SMI.Stanford.EDU>
To: <hy263book at 263.net>
CC: <biopython-bugs at bioperl.org>
Message-ID: <B7281BC8.805%jchang at smi.stanford.edu>
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Hi Huang,

Could you send the file that's generating the output?  We have regression
tests that check for behavior for "No hits found", and it does not generate
any error message, as designed.

helio:~/remotecvs/biopython/Tests/Blast> python
Python 2.1 (#7, Apr 17 2001, 18:53:25)
[GCC 2.8.1] on sunos5
Type "copyright", "credits" or "license" for more information.
>>> from Bio.Blast import NCBIStandalone
>>> rec = NCBIStandalone.BlastParser().parse_file('bt002')
>>> print rec.alignments
[]
>>> 

Thanks,
Jeff


> From: biopython-bugs at bioperl.org
> Date: Wed, 16 May 2001 04:14:35 -0400
> To: biopython-dev at biopython.org
> Subject: [Biopython-dev] Notification: incoming/31
> 
> JitterBug notification
> 
> new message incoming/31
> 
> Message summary for PR#31
> From: hy263book at 263.net
> Subject: When I encounter "No hits found"
> Date: Wed, 16 May 2001 04:14:35 -0400
> 0 replies     0 followups
> 
> ====> ORIGINAL MESSAGE FOLLOWS <====
> 
>> From hy263book at 263.net Wed May 16 04:14:35 2001
> Received: from localhost (localhost [127.0.0.1])
> by pw600a.bioperl.org (8.11.2/8.11.2) with ESMTP id f4G8EYb32187
> for <biopython-bugs at pw600a.bioperl.org>; Wed, 16 May 2001 04:14:35 -0400
> Date: Wed, 16 May 2001 04:14:35 -0400
> Message-Id: <200105160814.f4G8EYb32187 at pw600a.bioperl.org>
> From: hy263book at 263.net
> To: biopython-bugs at bioperl.org
> Subject: When I encounter "No hits found"
> 
> Full_Name: Huang Ying
> Module: Bio.Blast.NCBIStandalond
> Version: 
> OS: Win2k
> Submission from: (NULL) (166.111.30.26)
> 
> 
> I use Bio.Blast.NCBIStandalone.BlastParser to analysis Blast report.When blast
> result is "No hits found",python send the wrong message
> 
> 
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