[Biopython-dev] clustalw question

Cayte katel at worldpath.net
Sat Oct 14 21:57:53 EDT 2000


 clustal_format.py only allows asterisks and spaces in the last line of an alignment.  I just ran an alignment from:

http://www2.ebi.ac.uk/clustalw/


The equivalent line contained colons and periods, too.

The regexp is 

match_stars = Martel.Group("match_stars",
                           Martel.Re("[ \*]+") +
                           Martel.Opt(Martel.Str("\n")))

I'll send the output if you like.

                                              Cayte
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