[Biopython-dev] Changes in WWW BLAST format
Jeffrey Chang
jchang at SMI.Stanford.EDU
Fri Oct 13 02:16:28 EDT 2000
Great! Thanks for catching this. Could you send the output? I'd like to
add it to the suite of blast tests.
> ***************
> *** 204,211 ****
> read_and_call(uhandle, consumer.noevent, blank=1)
>
> # Read the descriptions and the following blank line.
> ! read_and_call_until(uhandle, consumer.description, blank=1)
> ! read_and_call_while(uhandle, consumer.noevent, blank=1)
>
> consumer.end_descriptions()
>
> --- 207,214 ----
> read_and_call(uhandle, consumer.noevent, blank=1)
>
> # Read the descriptions and the following blank line.
> ! read_and_call_until(uhandle, consumer.description, contains =
> '</PRE>)
> ! read_and_call_while(uhandle, consumer.noevent, contains =
> '</PRE>')
>
> consumer.end_descriptions()
I don't know for sure, but wouldn't this break compatibility with older
formats?
Jeff
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