[Biopython-dev] next release closer (?)

Jeffrey Chang jchang at SMI.Stanford.EDU
Sun Nov 19 03:48:26 EST 2000

>    Prodoc now passes the standalone test and I committed test_prodoc.

I'm having a few problems with this suite of tests:

- br_regrtest saves the name of the regression test in the first line of
the output file.  For example, the first line of output/test_seq is
"test_seq".  This seems to be missing with test_prodoc.

- "python br_regrtest test_prodoc.py" fails because it can't find
"Prosite/Doc/pdoc00472.txt".  That file isn't in the CVS repository and
needs to be added.
test test_prodoc crashed -- exceptions.IOError : [Errno 2] No such file or
tory: 'Prosite/Doc/pdoc00472.txt'
1 test failed: test_prodoc       

- The test_prodoc.py output contains the addresses of Reference objects.
    <Bio.Prosite.Prodoc.Reference instance at 007FEF2C>
    <Bio.Prosite.Prodoc.Reference instance at 007FD19C>
    <Bio.Prosite.Prodoc.Reference instance at 007FD12C>
This won't work, because the object address is going to be different from
computer to computer.  Instead of the pointer, please print out the
reference, or at least enough of the string to know that it's parsed


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