[Biopython-dev] next release closer (?)

[Cayte]

----- Original Message -----
From: "Jeffrey Chang" <jchang at SMI.Stanford.EDU>
To: <biopython-dev at biopython.org>
Sent: Friday, November 17, 2000 11:05 PM
Subject: [Biopython-dev] next release closer (?)


> - with Martel 0.35, the alignment stuff now works
>
> - I've fixed the Prosite and Prodoc parsers so that they now ignore
> whitespace.  Cayte, do you mind having another look at the
> test_prodoc regression test?  Please verify the results and check in the
> output file.  There's currently no output/test_prodoc
>
   Prodoc now passes the standalone test and I committed test_prodoc.  With
my upgrade to Python2, br_regrtest causes this output.

Traceback (most recent call last):
  File "br_regrtest.py", line 36, in ?
    test_support = __import__("test/test_support")
NameError: Case mismatch for module name test/test_support
(filename c:\python20\lib\test_support.py)

  Its puzzling because only lower case is used as far as I can see.  My
environment is:

TMP=c:\windows\TEMP
TEMP=C:\windows\TEMP
PROMPT=$p$g
winbootdir=C:\WINDOWS
COMSPEC=C:\WINDOWS\COMMAND.COM
PATH=C:\JDK1.2.2\BIN;JUNIT3.2;C:\PROGRA~1\CYGNUS~1\ECOS\TOOLS\BIN;C:\BC5\BIN
;C:\
CYGNUS\CYGWIN~1\H-I586~1\BIN;C:\PROGRA~1\TCL\BIN;C:\PERL\BIN;C:\PYTHON20;C:\
WIND
OWS;C:\WINDOWS;C:\WINDOWS\COMMAND;C:\PROGRA~1\NETWOR~1\MCAFEE~1;C:\PKWARE;C:
\CVS

JAXPHOME=C:\Program Files\JavaSoft\Jaxp1_0-ea1
PYTHONPATH=.;C:\PYTHON20\LIB\;C:\PYTHON20\WXPYTHON\;C:\BIOPYT~1.90-;C:\TEXTT
O~1;
C:\PYXML-~1.1;C:\BIOPYT~1.90-\TESTS
VSL=C:\MODSOFT\VSL
CLASSPATH=C:\PROGRAM
FILES\JAVASOFT\JAXP1_0-EA1\JAXP.JAR;C:\;C:\BIOJAVA;C:\JUNIT
3.2\JUNIT.JAR;.
CVSROOT=cvs at cvs.biopython.org
windir=C:\WINDOWS
BLASTER=A240 I5 D1 T4
CMDLINE=python br_regrtest.py


                              Cayte