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<CENTER><H1><a href="http://bioperl.org">Bioperl</a> Reformatted HTML of BLASTP Search Report<br> for Q0045</H1></CENTER>BLASTP 2.2.12 [Aug-07-2005]<p><b>Reference:</b> Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,<br>
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),<br>
"Gapped BLAST and PSI-BLAST: a new generation of protein database search<br>
programs", Nucleic Acids Res. 25:3389-3402.<p>
<b>Query=</b> Q0045 COX1 SGDID:S000007260, Chr Mito from 13818-13986,16435-16470,18954-18991,20508-20984,21995-22246, 23612-23746,25318-25342,26229-26701, Verified ORF, "Subunit I of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits"<br><dd>(534 letters)</dd>
<p>
<b>Database:</b> Q0045del61 <br><dd>1 sequences; 533 total letters<p></dd>
<p>
<table border=0>
<tr><th>Sequences producing significant alignments:</th>
<th>Score<br>(bits)</th><th>E<br>value</th></tr><tr><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=protein&cmd=search&term=Q0045">Q0045</a> COX1 SGDID:S000007260, Chr Mito from 13818-13986,16435-16...</td><td>1062</td><td><a href="#Q0045">0</a></td></tr>
</table><p>
<p><p><a name="Q0045">
><b><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=protein&cmd=search&term=Q0045">Q0045</a></b> COX1 SGDID:S000007260, Chr Mito from 13818-13986,16435-16470,18954-18991,20508-20984, 21995-22246,23612-23746,25318-25342,26229-26701, Verified ORF, "Subunit I of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits"
<dd>Length = 533</dd><p>
Score = 1062 bits (2747), Expect = 0.0<br>
Identities = 533/534 (99%), Positives = 533/534 (99%), Gaps = 1/534 (0%)</a><p>
<pre>Query: 1 MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVV 60
MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVV
Sbjct: 1 MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVV 60
Query: 61 GHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVE 120
HAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVE
Sbjct: 61 -HAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVE 119
Query: 121 SGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMH 180
SGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMH
Sbjct: 120 SGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMH 179
Query: 181 KLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG 240
KLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG
Sbjct: 180 KLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG 239
Query: 241 HPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDAD 300
HPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDAD
Sbjct: 240 HPEVYILIIPGFGIISHVVSTYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDAD 299
Query: 301 TRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALAN 360
TRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALAN
Sbjct: 300 TRAYFTSATMIIAIPTGIKIFSWLATIHGGSIRLATPMLYAIAFLFLFTMGGLTGVALAN 359
Query: 361 ASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLIFIG 420
ASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLIFIG
Sbjct: 360 ASLDVAFHDTYYVVGHFHYVLSMGAIFSLFAGYYYWSPQILGLNYNEKLAQIQFWLIFIG 419
Query: 421 ANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGL 480
ANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGL
Sbjct: 420 ANVIFFPMHFLGINGMPRRIPDYPDAFAGWNYVASIGSFIATLSLFLFIYILYDQLVNGL 479
Query: 481 NNKVNNKSVIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS 534
NNKVNNKSVIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS
Sbjct: 480 NNKVNNKSVIYNKAPDFVESNTIFNLNTVKSSSIEFLLTSPPAVHSFNTPAVQS 533
</pre>
<p><p><hr><h2>Search Parameters</h2><table border=1><tr><th>Parameter</th><th>Value</th>
<tr><td>allowgaps</td><td>yes</td></tr>
<tr><td>expect</td><td>10.0</td></tr>
<tr><td>gapext</td><td>1</td></tr>
<tr><td>gapopen</td><td>11</td></tr>
<tr><td>matrix</td><td>BLOSUM62</td></tr>
</table><p><h2>Search Statistics</h2><table border=1><tr><th>Statistic</th><th>Value</th></tr>
<tr><td>A</td><td>40</td></tr>
<tr><td>Hits_to_DB</td><td>1368</td></tr>
<tr><td>S1</td><td>26</td></tr>
<tr><td>S1_bits</td><td>15.1</td></tr>
<tr><td>S2</td><td>26</td></tr>
<tr><td>S2_bits</td><td>14.6</td></tr>
<tr><td>T</td><td>11</td></tr>
<tr><td>X1</td><td>15</td></tr>
<tr><td>X1_bits</td><td>7.1</td></tr>
<tr><td>X2</td><td>129</td></tr>
<tr><td>X2_bits</td><td>49.7</td></tr>
<tr><td>X3</td><td>129</td></tr>
<tr><td>X3_bits</td><td>49.7</td></tr>
<tr><td>dbentries</td><td>1</td></tr>
<tr><td>dbletters</td><td>533</td></tr>
<tr><td>effective_hsplength</td><td>35</td></tr>
<tr><td>effectivedblength</td><td>498</td></tr>
<tr><td>effectivespace</td><td>248502</td></tr>
<tr><td>effectivespaceused</td><td>248502</td></tr>
<tr><td>entropy</td><td>0.441</td></tr>
<tr><td>entropy_gapped</td><td>0.140</td></tr>
<tr><td>kappa</td><td>0.142</td></tr>
<tr><td>kappa_gapped</td><td>0.0410</td></tr>
<tr><td>lambda</td><td>0.328</td></tr>
<tr><td>lambda_gapped</td><td>0.267</td></tr>
<tr><td>num_extensions</td><td>54</td></tr>
<tr><td>num_successful_extensions</td><td>6</td></tr>
<tr><td>posted_date</td><td>Feb 16, 2006 10:43 AM</td></tr>
<tr><td>querylength</td><td>499</td></tr>
<tr><td>seqs_better_than_cutoff</td><td>1</td></tr>
</table><P><hr><h5>Produced by Bioperl module Bio::SearchIO::Writer::HTMLResultWriter on Fri Feb 17 10:13:17 2006<br>Revision: HTMLResultWriter.pm,v 1.35.2.1 2005/10/09 15:16:33 jason Exp</h5>
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