<HTML>
<HEAD> <CENTER><TITLE>Bioperl Reformatted HTML of BLASTP output with Bioperl Bio::SearchIO system</TITLE></CENTER></HEAD>
<!------------------------------------------------------------------->
<!-- Generated by Bio::SearchIO::Writer::HTMLResultWriter -->
<!-- HTMLResultWriter.pm,v 1.35.2.1 2005/10/09 15:16:33 jason Exp -->
<!-- http://bioperl.org -->
<!------------------------------------------------------------------->
<BODY BGCOLOR="WHITE">
<CENTER><H1><a href="http://bioperl.org">Bioperl</a> Reformatted HTML of BLASTP Search Report<br> for YAL001C</H1></CENTER>BLASTP 2.2.12 [Aug-07-2005]<p><b>Reference:</b> Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,<br>
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),<br>
"Gapped BLAST and PSI-BLAST: a new generation of protein database search<br>
programs", Nucleic Acids Res. 25:3389-3402.<p>
<b>Query=</b> YAL001C TFC3 SGDID:S000000001, Chr I from 151168-151099,151008-147596, reverse complement, Verified ORF, "Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding"<br><dd>(1,160 letters)</dd>
<p>
<b>Database:</b> YAL001CDB <br><dd>1 sequences; 1,159 total letters<p></dd>
<p>
<table border=0>
<tr><th>Sequences producing significant alignments:</th>
<th>Score<br>(bits)</th><th>E<br>value</th></tr><tr><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=protein&cmd=search&term=YAL001C">YAL001C</a> TFC3 SGDID:S000000001, Chr I from 151168-151099,151008-14...</td><td>2279</td><td><a href="#YAL001C">0</a></td></tr>
</table><p>
<p><p><a name="YAL001C">
><b><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=protein&cmd=search&term=YAL001C">YAL001C</a></b> TFC3 SGDID:S000000001, Chr I from 151168-151099,151008-147596, reverse complement, Verified ORF, "Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding"
<dd>Length = 1,159</dd><p>
Score = 2279 bits (5906), Expect = 0.0<br>
Identities = 1159/1160 (99%), Positives = 1159/1160 (99%), Gaps = 1/1160 (0%)</a><p>
<pre>Query: 1 MVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIE 60
MVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIE
Sbjct: 1 MVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIE 60
Query: 61 VYCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKS 120
YCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKS
Sbjct: 61 -YCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKS 119
Query: 121 GEKGINTMDLAQVTGQDPRSVTGRIKKINHLLTSSQLIYKGHVVKQLKLKKFSHDGVDSN 180
GEKGINTMDLAQVTGQDPRSVTGRIKKINHLLTSSQLIYKGHVVKQLKLKKFSHDGVDSN
Sbjct: 120 GEKGINTMDLAQVTGQDPRSVTGRIKKINHLLTSSQLIYKGHVVKQLKLKKFSHDGVDSN 179
Query: 181 PYINIRDHLATIVEVVKRSKNGIRQIIDLKRELKFDKEKRLSKAFIAAIAWLDEKEYLKK 240
PYINIRDHLATIVEVVKRSKNGIRQIIDLKRELKFDKEKRLSKAFIAAIAWLDEKEYLKK
Sbjct: 180 PYINIRDHLATIVEVVKRSKNGIRQIIDLKRELKFDKEKRLSKAFIAAIAWLDEKEYLKK 239
Query: 241 VLVVSPKNPAIKIRCVKYVKDIPDSKGSPSFEYDSNSADEDSVSDSKAAFEDEDLVEGLD 300
VLVVSPKNPAIKIRCVKYVKDIPDSKGSPSFEYDSNSADEDSVSDSKAAFEDEDLVEGLD
Sbjct: 240 VLVVSPKNPAIKIRCVKYVKDIPDSKGSPSFEYDSNSADEDSVSDSKAAFEDEDLVEGLD 299
Query: 301 NFNATDLLQNQGLVMEEKEDAVKNEVLLNRFYPLQNQTYDIADKSGLKGISTMDVVNRIT 360
NFNATDLLQNQGLVMEEKEDAVKNEVLLNRFYPLQNQTYDIADKSGLKGISTMDVVNRIT
Sbjct: 300 NFNATDLLQNQGLVMEEKEDAVKNEVLLNRFYPLQNQTYDIADKSGLKGISTMDVVNRIT 359
Query: 361 GKEFQRAFTKSSEYYLESVDKQKENTGGYRLFRIYDFEGKKKFFRLFTAQNFQKLTNAED 420
GKEFQRAFTKSSEYYLESVDKQKENTGGYRLFRIYDFEGKKKFFRLFTAQNFQKLTNAED
Sbjct: 360 GKEFQRAFTKSSEYYLESVDKQKENTGGYRLFRIYDFEGKKKFFRLFTAQNFQKLTNAED 419
Query: 421 EISVPKGFDELGKSRTDLKTLNEDNFVALNNTVRFTTDSDGQDIFFWHGELKIPPNSKKT 480
EISVPKGFDELGKSRTDLKTLNEDNFVALNNTVRFTTDSDGQDIFFWHGELKIPPNSKKT
Sbjct: 420 EISVPKGFDELGKSRTDLKTLNEDNFVALNNTVRFTTDSDGQDIFFWHGELKIPPNSKKT 479
Query: 481 PNKNKRKRQVKNSTNASVAGNISNPKRIKLEQHVSTAQEPKSAEDSPSSNGGTVVKGKVV 540
PNKNKRKRQVKNSTNASVAGNISNPKRIKLEQHVSTAQEPKSAEDSPSSNGGTVVKGKVV
Sbjct: 480 PNKNKRKRQVKNSTNASVAGNISNPKRIKLEQHVSTAQEPKSAEDSPSSNGGTVVKGKVV 539
Query: 541 NFGGFSARSLRSLQRQRAILKVMNTIGGVAYLREQFYESVSKYMGSTTTLDKKTVRGDVD 600
NFGGFSARSLRSLQRQRAILKVMNTIGGVAYLREQFYESVSKYMGSTTTLDKKTVRGDVD
Sbjct: 540 NFGGFSARSLRSLQRQRAILKVMNTIGGVAYLREQFYESVSKYMGSTTTLDKKTVRGDVD 599
Query: 601 LMVESEKLGARTEPVSGRKIIFLPTVGEDAIQRYILKEKDSKKATFTDVIHDTEIYFFDQ 660
LMVESEKLGARTEPVSGRKIIFLPTVGEDAIQRYILKEKDSKKATFTDVIHDTEIYFFDQ
Sbjct: 600 LMVESEKLGARTEPVSGRKIIFLPTVGEDAIQRYILKEKDSKKATFTDVIHDTEIYFFDQ 659
Query: 661 TEKNRFHRGKKSVERIRKFQNRQKNAKIKASDDAISKKSTSVNVSDGKIKRRDKKVSAGR 720
TEKNRFHRGKKSVERIRKFQNRQKNAKIKASDDAISKKSTSVNVSDGKIKRRDKKVSAGR
Sbjct: 660 TEKNRFHRGKKSVERIRKFQNRQKNAKIKASDDAISKKSTSVNVSDGKIKRRDKKVSAGR 719
Query: 721 TTVVVENTKEDKTVYHAGTKDGVQALIRAVVVTKSIKNEIMWDKITKLFPNNSLDNLKKK 780
TTVVVENTKEDKTVYHAGTKDGVQALIRAVVVTKSIKNEIMWDKITKLFPNNSLDNLKKK
Sbjct: 720 TTVVVENTKEDKTVYHAGTKDGVQALIRAVVVTKSIKNEIMWDKITKLFPNNSLDNLKKK 779
Query: 781 WTARRVRMGHSGWRAYVDKWKKMLVLAIKSEKISLRDVEELDLIKLLDIWTSFDEKEIKR 840
WTARRVRMGHSGWRAYVDKWKKMLVLAIKSEKISLRDVEELDLIKLLDIWTSFDEKEIKR
Sbjct: 780 WTARRVRMGHSGWRAYVDKWKKMLVLAIKSEKISLRDVEELDLIKLLDIWTSFDEKEIKR 839
Query: 841 PLFLYKNYEENRKKFTLVRDDTLTHSGNDLAMSSMIQREISSLKKTYTRKISASTKDLSK 900
PLFLYKNYEENRKKFTLVRDDTLTHSGNDLAMSSMIQREISSLKKTYTRKISASTKDLSK
Sbjct: 840 PLFLYKNYEENRKKFTLVRDDTLTHSGNDLAMSSMIQREISSLKKTYTRKISASTKDLSK 899
Query: 901 SQSDDYIRTVIRSILIESPSTTRNEIEALKNVGNESIDNVIMDMAKEKQIYLHGSKLECT 960
SQSDDYIRTVIRSILIESPSTTRNEIEALKNVGNESIDNVIMDMAKEKQIYLHGSKLECT
Sbjct: 900 SQSDDYIRTVIRSILIESPSTTRNEIEALKNVGNESIDNVIMDMAKEKQIYLHGSKLECT 959
Query: 961 DTLPDILENRGNYKDFGVAFQYRCKVNELLEAGNAIVINQEPSDISSWVLIDLISGELLN 1020
DTLPDILENRGNYKDFGVAFQYRCKVNELLEAGNAIVINQEPSDISSWVLIDLISGELLN
Sbjct: 960 DTLPDILENRGNYKDFGVAFQYRCKVNELLEAGNAIVINQEPSDISSWVLIDLISGELLN 1019
Query: 1021 MDVIPMVRNVRPLTYTSRRFEIRTLTPPLIIYANSQTKLNTARKSAVKVPLGKPFSRLWV 1080
MDVIPMVRNVRPLTYTSRRFEIRTLTPPLIIYANSQTKLNTARKSAVKVPLGKPFSRLWV
Sbjct: 1020 MDVIPMVRNVRPLTYTSRRFEIRTLTPPLIIYANSQTKLNTARKSAVKVPLGKPFSRLWV 1079
Query: 1081 NGSGSIRPNIWKQVVTMVVNEIIFHPGITLSRLQSRCREVLSLHEISEICKWLLERQVLI 1140
NGSGSIRPNIWKQVVTMVVNEIIFHPGITLSRLQSRCREVLSLHEISEICKWLLERQVLI
Sbjct: 1080 NGSGSIRPNIWKQVVTMVVNEIIFHPGITLSRLQSRCREVLSLHEISEICKWLLERQVLI 1139
Query: 1141 TTDFDGYWVNHNWYSIYEST 1160
TTDFDGYWVNHNWYSIYEST
Sbjct: 1140 TTDFDGYWVNHNWYSIYEST 1159
</pre>
<p><p><hr><h2>Search Parameters</h2><table border=1><tr><th>Parameter</th><th>Value</th>
<tr><td>allowgaps</td><td>yes</td></tr>
<tr><td>expect</td><td>10.0</td></tr>
<tr><td>gapext</td><td>1</td></tr>
<tr><td>gapopen</td><td>11</td></tr>
<tr><td>matrix</td><td>BLOSUM62</td></tr>
</table><p><h2>Search Statistics</h2><table border=1><tr><th>Statistic</th><th>Value</th></tr>
<tr><td>A</td><td>40</td></tr>
<tr><td>Hits_to_DB</td><td>3997</td></tr>
<tr><td>S1</td><td>32</td></tr>
<tr><td>S1_bits</td><td>17.5</td></tr>
<tr><td>S2</td><td>32</td></tr>
<tr><td>S2_bits</td><td>16.9</td></tr>
<tr><td>T</td><td>11</td></tr>
<tr><td>X1</td><td>16</td></tr>
<tr><td>X1_bits</td><td>7.3</td></tr>
<tr><td>X2</td><td>38</td></tr>
<tr><td>X2_bits</td><td>14.6</td></tr>
<tr><td>X3</td><td>64</td></tr>
<tr><td>X3_bits</td><td>24.7</td></tr>
<tr><td>dbentries</td><td>1</td></tr>
<tr><td>dbletters</td><td>1159</td></tr>
<tr><td>effective_hsplength</td><td>47</td></tr>
<tr><td>effectivedblength</td><td>1112</td></tr>
<tr><td>effectivespace</td><td>1237656</td></tr>
<tr><td>effectivespaceused</td><td>1237656</td></tr>
<tr><td>entropy</td><td>0.372</td></tr>
<tr><td>entropy_gapped</td><td>0.140</td></tr>
<tr><td>kappa</td><td>0.132</td></tr>
<tr><td>kappa_gapped</td><td>0.0410</td></tr>
<tr><td>lambda</td><td>0.315</td></tr>
<tr><td>lambda_gapped</td><td>0.267</td></tr>
<tr><td>num_extensions</td><td>171</td></tr>
<tr><td>num_successful_extensions</td><td>10</td></tr>
<tr><td>posted_date</td><td>Jan 22, 2006 1:54 PM</td></tr>
<tr><td>querylength</td><td>1113</td></tr>
<tr><td>seqs_better_than_cutoff</td><td>1</td></tr>
</table><P><hr><h5>Produced by Bioperl module Bio::SearchIO::Writer::HTMLResultWriter on Sun Jan 22 13:54:32 2006<br>Revision: HTMLResultWriter.pm,v 1.35.2.1 2005/10/09 15:16:33 jason Exp</h5>
<P>
</BODY>
</HTML>