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<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN lang=SV style="mso-ansi-language: SV">Dear BioPerl, <?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN lang=SV style="mso-ansi-language: SV"> <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US">It’s a great pleasure to work with BioPerl these days. So much functionality and increasingly good documentation.<o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US"> <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US">I have a little problem which I am sure one of the experts here can answer with one sentence. I need to align SwissProt seqs to their nucleotide clones. I am using remote database access to SwissProt with Bio::DB modules, getting my RichSeq object. I know how to get all the features and annotations, but how do I get an xref to the EMBL clone? This info is in SwissProt entries, but is it also in the RichSeq object?<o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US"> <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US">Naturally I can get SwissProt-EMBL mapping from a flatfile, but I was wondering if there is an elegant “BioPerl way” of doing that. <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US"> <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US">Many thanks, <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US"> <o:p></o:p></SPAN></P>
<P class=MsoNormal style="MARGIN: 0in 0in 0pt"><SPAN style="mso-ansi-language: EN-US">Lukasz<o:p></o:p></SPAN></P>
<P><BR><BR>========================= <BR>Lukasz Huminiecki, DPhil <BR>Experimental Bioinformatics Lab <BR>CGB, KI, Stockholm <BR><BR><BR></P></BODY>