[Bioperl-l] standardize shebang line in bioperl scripts

Fields, Christopher J cjfields at illinois.edu
Tue Sep 4 15:41:42 UTC 2018


On September 4, 2018 at 9:41:53 AM, Carnë Draug (carandraug+dev at gmail.com<mailto:carandraug+dev at gmail.com>) wrote:
...

I have pushed the changes. This required changes to the following
repos:

Bio-Biblio
Bio-EUtilities
Bio-SearchIO-Writer-BSMLResultWriter
bioperl-live

Not sure if the change is worth a new patch release. I also did not
mention the change on the Changelog because again, I'm not sure if
this worth a note.

The issue remains on the Bio-Graphics package but that's not really
part of bioperl anyway and I never get a reply from them about bug
reports and patches anyway.

I have also removed the `-w` flag on all other modules and scripts,
which covered many other repositories, but I done it on the day I sent
the first email.

Carnë

We’re probably overdue for a patch release.  I still see some odd random travis-ci fails with bioperl but restarting them seems to fix them, not sure why.  I do see a more serious fail on Bio-EUtilities that’s worth investigating, something that is going on with espell:

https://travis-ci.org/bioperl/Bio-EUtilities

chris
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