[Bioperl-l] Downloading genbank (full) format
carandraug+dev at gmail.com
Wed Sep 23 12:52:02 UTC 2015
On 22 September 2015 at 21:57, Cacau Centurion
<cacaucenturion2 at gmail.com> wrote:
> I would like to download sequences in genbank (full) format in batch. What
> should the format be (see the codes)?
> I tried 'gb' but got sequences in genbank format. Sometimes the full genome
> sequences might not be downloaded.
> $seqin = Bio::SeqIO->new(-file => $out,
> -format => $format,
Take a look at the bp_genbank_ref_extractor for how to do it .
Alternatively, you can just use that program. It batch downloads
all the results from a genbank search (see the examples from its
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